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Image Search Results
Journal: Methods in molecular biology (Clifton, N.J.)
Article Title: Methods of Protein Misfolding Cyclic Amplification
doi: 10.1007/978-1-4939-7244-9_13
Figure Lengend Snippet: Representative results from the experiments on PMCAb, dgPMCAb, and PMCAb in an RNA-depleted environment and an estimation of amplification rate. Each reaction was done in the presence of three PTFE spheres. The sonication protocol consisted of 30 s sonication pulses at 50% power performed every 30 min during 24 h. (a) PMCAb and dgPMCAb reactions were seeded with 10−2 dilution of brain material from the first passage of a synthetic strain LOTSS [22]. Ten microliters of reaction products from a completed round were used to seed 90 μl of the subsequent round. In the first passage, brain-derived LOTSS represents a mixture of authentic PrPSc and atypical PrPres, which are selectively amplified in PMCAb (upper panel) and dgPMCAb (lower panel), respectively. Amplification of PrPSc was visualized with 3F4 antibody, while atypical PrPres was detected with SAF-84. (b) PMCAb in an RNA-depleted environment illustrates RNA dependency of amplification of 263 K scrapie material. The reactions were seeded with 10−3 diluted brain material from terminally ill hamsters. Ten microliters of reaction products from a completed round were used to seed 90 μl of the subsequent round. Western blot was stained with SAF-84. (c). Estimation of an amplification rate for LOTSS. PMCAb reactions were seeded with 10−4 diluted brain material from the second passage of LOTSS. For the dilution factor ×30, 10 μl of a completed reaction were mixed with 20 μl of conversion buffer, and 10 μl of this dilution was used to seed subsequent PMCAb rounds. For the dilution factor ×100, 10 μl of a completed reaction were mixed with 90 μl of conversion buffer, and 10 μl of this dilution was used to seed subsequent PMCAb rounds. For the dilution factors ×300 and ×1000, 10 μl of a completed reaction was diluted threefold and tenfold, respectively, into conversion buffer and then diluted further by mixing 10 μl with 90 μl of conversion buffer each, and 10 μl out of these dilutions were used to seed subsequent PMCAb rounds. An amplification rate of LOTTS was estimated to be 300-fold per PMCAb round. An increase in intensity of the signal from round to round illustrates the ability of synthetic strains to quickly adapt to an PMCAb environment and increase its amplification efficiency as previously described [23]. Western blot was stained with SAF-84
Article Snippet: Protein Misfolding Cyclic Amplification with
Techniques: Amplification, Sonication, Derivative Assay, Western Blot, Staining
Journal: Methods in molecular biology (Clifton, N.J.)
Article Title: Methods of Protein Misfolding Cyclic Amplification
doi: 10.1007/978-1-4939-7244-9_13
Figure Lengend Snippet: Schematic representation of a PMCAb experiment for estimating a strain-specific amplification rate. Several serial PMCAb reactions with incrementing dilution factors between rounds are initiated using the same scrapie material. In each individual serial PMCAb reaction, the dilution factor between rounds is kept constant. The highest dilution factor at which PrPSc amplification fully compensates the effect of dilution determines the amplification rate
Article Snippet: Protein Misfolding Cyclic Amplification with
Techniques: Amplification
Journal: Methods in molecular biology (Clifton, N.J.)
Article Title: Methods of Protein Misfolding Cyclic Amplification
doi: 10.1007/978-1-4939-7244-9_13
Figure Lengend Snippet: A floating rack for holding PMCAb tubes in the microplate horn is made from a 6 mm extra firm foam sheet available in craft stores
Article Snippet: Protein Misfolding Cyclic Amplification with
Techniques: CRAfT Assay